BLAST

  • BLAST (ncbi version-faster w/graphical view)
  • BLAST (viroblast version w/download ability)

    GENES

    Enter Bova gene ID (e.g., Bova1_5.0003.g87, Bova1_5.0023.g94.t1, Bova1_4.0082.g39 (Bova1_4 ids will redirect to Bova1_5)):

    STATS

  • genomic bases: 91,597,139
  • genomic sequences: 4,989
  • genome N50: 233,527
  • predicted genes: 13,762 (18,661 gene models, some genes include multiple isoforms)

    DOWNLOADS

    Raw data

  • NCBI:SRA: Illumina and PacBio genomic reads
  • NCBI:SRA: tissue-specific transcriptomic reads

    Assemblies, gene models, etc.

  • Bova1.5.fa.gz (genomic scaffolds)
  • Bova1.5.cds.gz (gene models)
  • Bova1.5.aa.gz (protein models)
  • Bova1.5.gff.gz (genomic annotation)
  • Bova_aboral_organ_rep1.fa.gz (assembled RNA-Seq)
  • Bova_aboral_organ_rep2.fa.gz (assembled RNA-Seq)
  • Bova_aboral_organ_rep3.fa.gz (assembled RNA-Seq)
  • Bova_comb_rows_rep1.fa.gz (assembled RNA-Seq)
  • Bova_comb_rows_rep2.fa.gz (assembled RNA-Seq)
  • Bova_comb_rows_rep3.fa.gz (assembled RNA-Seq)

    ABOUT Beroe ovata

  • Animal Diversity Web
  • WoRMS
  • GBIF

    Cite BovaDB

    Vargas AM, DeBiasse MB, Dykes LL, Edgar A, Hayes TD, Groso DJ, Babonis LS, Martindale MQ, Ryan JF.
    Morphological and dietary changes encoded in the genome of Beroe ovata, a ctenophore-eating ctenophore.
    NAR Genomics and Bioinformatics. 2024 Jun;6(2):lqae072.
    https://doi.org/10.1093/nargab/lqae072


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