Download alien_index database
alien_index is a program that identifies potential non-animal transcripts in animal transcriptomes. The program requires a BLAST database with sequences from program that identifies potential non-animal transcripts in animal transcriptomes.
The following two files make up version 0.02 of the alien_index database
non_meta.fa.gz
non_meta.fa contains the following protein models downloaded
from EnsemblMetazoa on January 21, 2016:
- Acanthamoeba_castellanii_str_neff (Amoebozoa)
- Aspergillus_nidulans (Fungi)
- Candidatus_aquiluna_sp_imcc13023 (Bacteria / Terrabacteria)
- Candidatus_nitrosopumilus_salaria_bd31 (Archaea)
- Candidatus_pelagibacter_sp_imcc9063 (Bacteria / Proteobacteria)
- Glaciecola_pallidula_dsm_14239_acam_615 (Bacteria / Proteobacteria)
- Marine_gamma_proteobacterium_htcc2080 (Bacteria / Proteobacteria)
- Marine_group_i_thaumarchaeote_scgc_aaa799_b03 (Archae)
- Marinobacter_adhaerens_hp15 (Bacteria / Proteobacteria)
- Phaeodactylum_tricornutum (Stramenopiles)
- Saccharomyces_cerevisiae (Fungi)
- Thalassiosira_pseudonana (Stramenopiles)
meta.fa.gz
meta.fa contains the following protein models downloaded
from EnsemblMetazoa on January 21, 2016:
- Amphimedon_queenslandica (Porifera)
- Capitella_teleta (Annelida)
- Crassostrea_gigas (Mollusca)
- Daphnia_pulex (Arthropoda)
- Drosophila_melanogaster (Arthropoda)
- Helobdella_robusta (Annelida)
- Lottia_gigantea (Mollusca)
- Mnemiopsis_leidyi (Ctenophora)
- Nematostella_vectensis (Cnidaria)
- Strigamia_maritima (Arthropoda)
- Strongylocentrotus_purpuratus (Echinodermata)
- Trichoplax_adhaerens (Placozoa)
Below is version 0.01 of our alien_index BLAST database. the current version of alien_index does not have hardcoded keys and it is now much easier to build custom databases. IT IS NOT RECOMMENDED TO USE THIS VERSION OF THE DATABASE. It is posted here for legacy purposes.
The key to the database is that the definition lines of all non-metazoan sequences begin with either "arch." "bact." or "nm_euk.": alien_index_blastdb.0.01.fasta.gz